This is a stub entry discussing my experience at this year’s EACR Cancer Genomics, Multiomics and Computational Biology conference in Bergamo. Building a Platform for Integrative Discovery and D...
Graph Signal Processing workshop 2023
This is a stub entry discussing my experience at this year’s Graph Signal Processing workshop in Oxford. I attended together with collaborators Aarthi Venkat and Prof. Smita Krishnaswamy, where ...
Big -omic Data and GPU acceleration with CUDA
As part of the peer-review process of Cardoso Rodriguez & Qin et al. 2023, we decided to compare our murine organoid data with publicly available patient cohorts of Colorectal Cancer. While som...
Oxford Nanopore and their EPI2ME nextflow pipelines
This is a stub entry for some of my work helping a collaborator sequence and run some Oxford Nanopore data. The entry will include work troubleshooting a MinION Mk1C device, and exploring the next...
Fedora Silverblue 38 and a year of Linux and immutable OSes
More than a year with Linux/GNE as main OS. Aim to move to open source projects. Celebrate with Fedora 38!
Computing Krackhardt hierarchies with pykrack
Stub entry for the pyKrack tool. Explanation of the aims and tool will go here. This is a link to the code. This is a link to the docs.
VR Landscapes
Stub entry for the Valley-Ridge score and single-cell Waddington-like landscapes. Explanation of the aims and tool will go here. This is a link to the code. This is a link to the docs.
A Single-cell Perturbation Landscape of Colonic Stem Cell Polarisation
Stub entry for the preprint.