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Ferran Cardoso
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Presenting the IDD platform at the EACR Cancer Multiomics conference and

This is a stub entry discussing my experience at this year’s EACR Cancer Genomics, Multiomics and Computational Biology conference in Bergamo. Building a Platform for Integrative Discovery and D...

Update and future

PhD & Thesis

Graph Signal Processing workshop 2023

This is a stub entry discussing my experience at this year’s Graph Signal Processing workshop in Oxford. I attended together with collaborators Aarthi Venkat and Prof. Smita Krishnaswamy, where ...

Big -omic Data and GPU acceleration with CUDA

As part of the peer-review process of Cardoso Rodriguez & Qin et al. 2023, we decided to compare our murine organoid data with publicly available patient cohorts of Colorectal Cancer. While som...

Oxford Nanopore and their EPI2ME nextflow pipelines

This is a stub entry for some of my work helping a collaborator sequence and run some Oxford Nanopore data. The entry will include work troubleshooting a MinION Mk1C device, and exploring the next...

Fedora Silverblue 38 and a year of Linux and immutable OSes

More than a year with Linux/GNE as main OS. Aim to move to open source projects. Celebrate with Fedora 38!

Computing Krackhardt hierarchies with pykrack

Stub entry for the pyKrack tool. Explanation of the aims and tool will go here. This is a link to the code. This is a link to the docs.

VR Landscapes

Stub entry for the Valley-Ridge score and single-cell Waddington-like landscapes. Explanation of the aims and tool will go here. This is a link to the code. This is a link to the docs.

A Single-cell Perturbation Landscape of Colonic Stem Cell Polarisation

Stub entry for the preprint.