VRland App

This notebooks implements an interactive Panel application to compute and render VR landscapes.

pn.extension(comms="ipywidgets")

Data

Load Cell x Metadata dataset, where the columns must contain sample/condition and cluster metadata, as well as cellular pluripotency and trancriptomic rate of change metrics.

For the later two, we suggest using CCAT and RNA velocity vector lengths respectively.

Additional metadata layers, such as cell-cycle labels or key gene expression values, can also be added to the dataset and used for annotating the resulting landscapes in later steps, but they will not be used for the computation of VR scores.

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source

foo

 foo ()

# test_eq(say_hi("Jeremy"), "Hi Jeremy!")